PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_38970g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 122aa    MW: 12785.2 Da    PI: 6.0897
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_38970g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.21.3e-302781257
    ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                   e+vrY+eC+kNhAas+Gg+avDGC Ef++s g+egta+a+kCaAC+CHR+FHRrev
  MA_38970g0010 27 EGVRYRECRKNHAASTGGYAVDGCAEFIAS-GDEGTAEAMKCAACNCHRSFHRREV 81
                   579**************************9.999********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-292981IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-192996IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-263081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.7493180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MGPSEIVQQI EEGAAAIVRE GDAASREGVR YRECRKNHAA STGGYAVDGC AEFIASGDEG  60
TAEAMKCAAC NCHRSFHRRE VGNGTLCECH TAASIGGKLE TGPYASVIAY AGDNPPFRSM  120
AK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1048641e-144BT104864.1 Picea glauca clone GQ02815_P23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931461.12e-30PREDICTED: mini zinc finger protein 1-like
SwissprotQ9LJW51e-25MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA9NK892e-57A9NK89_PICSI; Putative uncharacterized protein
STRINGPP1S3_539V6.12e-25(Physcomitrella patens)
STRINGGSMUA_AchrUn_randomP14420_0014e-26(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.18e-27mini zinc finger 2